Just makes me wonder "why would you even do this? What was your reason?"god old fashioned butchery right there.
Just replace the door harness like bill said. Less confusion and less risk of an electrical fire. I did it when I replaced my drivers door, unfortunately for me the 97 doors didn't have provisions for the lock sensor so if I manually unlock the drivers door my alarm goes off. Whatever.
Clearly someone did some hacking. Did you check for power/fuse/relay. If they cut the wires.. who knows if they left them live, popped a fuse etc etc.