How are you tuning your car? I know I just about completely retune my car for the winter. I have to redo the VE tune, MAF tune, and timing gets changed.
Did you start with a stock tune or are you basing it off a DHP file?
My suggestion is to start over with your tune. You have more than enough mods to support a 3.4 pulley. So I suggest that you wipe the slate clean and start over.
Get a stock tune for your car, and make the necessary change the things you need to for your TB/MAF and cam, and injectors if other than stock. You can just copy over your tranny section if you want to, and code section. But start with a VE tune using a stock VE table. Then when that is complete, tune your MAF table. Then work on fueling and WOT fueling. Then increase your timing where you are able.