part of the coolant flow to the rear head goes through the blower and throttle body.
I figured leave it alone....because your blower is going to get hot as sin anyways...whats the point...I mean...really.
coolant goes LIM > blower > throttle body > blower > LIM > rear head for those ports we are talking about sealing.
if you block them you have to open up the part under that side cover that you mentioned to even it out.