So your oil pump is in your timing cover, so when you remove your timing cover for service, it is no longer primed. This is what I was getting at earlier. Since it's back together, I'd be lazy and use Scotty's method and remove your fuel relay, ignition module connector, and crank your engine over (just spinning it with the starter) in short bursts until your oil pressure comes back up.
Basically, you are running your engine with no oil going trough it right now. It's possible it will correct itself if you run it long enough, but running an engine without lubrication can and will cause damage, so you'll want to get your oil pressure corrected first.
Personally, I've never had to do a Case learn after doing this procedure or really ever (and I've swapped engines before with no issues). As far as idle relearn, it's always self corrected for me after driving once or twice. But it's worth a shot. (after you correct oil pressure)
Hopefully you haven't done any long term damage to your bearings by running it dry like you just did, but these engines are pretty stout.
Make sure your oil level is correct first and foremost.
If you oil pressure does not come up quickly after you try the above, you have two options:
1. remove oil pressure sender located on oil filter adapter, find the correct barb adapter to this hole and connect a tube running to it and attach a funnel to the other end. Try the above process except add a quart of oil to the tube and crank engine. This has never not primed the pump for me. The trick is being quick replacing the oil pressure sender sensor after removing the barb hose adapter.
2. Remove everything you just did down to the timing cover, remove oil pump cover, clean, pack with petroleum jelly, re-install screws with lock-tight, and re-assembly.
Obviously since it's back together, option 1. is your best choice and what I'd recommend. Usually I choose option 2 every time when I'm in the timing cover because it is much easier in the long run, and it works, but since it's back together, not really the best option here, just mentioning for future reference.