Sure thing
Decide which way you are going.
S3 NA or S3SC :
Use the aluminum oil pan and it's engine mount that comes on it. Looks like this:
You will need to look at your subframe and where the engine mount goes, there's a little flap of metal that would be on the oil pan side. This picture shows it removed. It's maybe 1/4" or so of metal. Easy to cut/grind.
That takes care of using the oil pan that is easy to redo the gasket and it's mount.
Only other thing you'll need to do is PCV. Use this first post to keep pcv function.
http://www.grandprixforums.net/threads/44478-How-to-get-PCV-to-work-instead-of-valve-cover-breather!
Now.. if you go NA:
Get a S3 to L36 throttle body adapter from Sseilmnop, pm him... he has or can make it.
http://www.grandprixforums.net/thre...n-3-Gen-5-L67-L32-Eaton-M90-SuperCharger-3800
Here's what one looks like between the TB and SC
Depending on how complete the engine is.. hook up your evap line from the fuel tank right to the evap on the UIM, open up the wire loom to cut the black tape and get the red connector for the evap from where it originally is located to the new location.
You can almost make both out in this pic of the S3 NA that lives in my car.
If the flex plate is on there.. it should have two sets of holes for the torque converter. As long as it does, it'll bolt right up to anything.
Look over the two motors side by side and ask anything you see that's different. I would expect the outlet of the rear exhaust manifold should be different, if it's in a slightly different location, swap only the rear manifold.
Boss...gotta run