do you know what a pcm is? powertrain control module. it controls how the engine and transmission work. on 97-03 grand prix's the pcm does all the work, on some of the newer grand prix's there is a pcm and a tcm and they both have to be tuned in car. but, I wouldn't worry about those.
if you can find someone local to tune your car that is best, but if you can send your pcm to someone to have it tuned that will also work, just not as good.
Transgo is a huge transmission parts company and as far as I know it is the best shift kit you can get for these cars.
as far as the stage 2 performance kit, I would piece your own kit together with headers like speed daddy or whatever you can find on ebay, they usually go for less than 250 and will out flow any downpipe.